Publications

2016-2019

S. Hamid, B. Akgül, "Cytoplasmically localized tRNA-derived fragments suppress proliferation and inhibit cap-dependent translation in Drosophila S2 cells", Molecular Genetics and Genomics, in revision.

B. Yaylak, İ. Erdoğan, B. Akgül, "Transcriptomics analysis of circular RNAs differentially expressed in apoptotic HeLa cells", Frontiers in Genetics, 10:176, 2019. 

B. Akgül, İ. Erdoğan, "Intracytoplasmic re-localization of miRISC complexes", Frontiers in Genetics, 9:403, 2018.

M.I. Coşacak, H. Yiğit, C. Kizil, B. Akgül, "Re-arrangements in the cytoplasmic distribution of small RNAs following the maternal-to-zygotic transition in Drosophila embryos", Genes, 9(2):82, 2018.

M.I. Coşacak, İ.Erdoğan, A. Nalbant, B. Akgül, "Small RNA data set that includes tRNA-derived fragments from Jurkat cells treated with camptothecin", Data in Brief, 17:397-400, 2018.

İ. Erdoğan, M.I. Coşacak, A.Nalbant, B. Akgül, "Deep sequencing reveals two Jurkat subpopulations with distinct miRNA profiles during camptothecin-induced apoptosis", Turkish Journal of Biology, 42:113-122 , 2018.

Ç. Göktaş, H. Yiğit, M.I. Coşacak, B. Akgül, "Differentially Expressed tRNA-Derived Small RNAs Co-Sediment Primarily with Non-Polysomal Fractions in Drosophila", Genes, 8(11): 333, 2017.

 

2011-2015

M. Kant, B. Akgül, A. Nalbant, “Endogenous heat shock protein GROEL of A. Actinomycetemcomitans preferentially targets primary human CD8+ T cells”, Tr. J. Biology, 39: 104-110, 2015.

S. Hamid, B. Akgül, “Master regulators of post-transcriptional gene expression are subject to regulation”, Methods in Molecular Biology, 1107:303-310, 2014

B. Akgül, Ç. Göktaş, “Gene reporter assay to validate microRNA targets in Drosophila S2 cells”, Methods in Molecular Biology, 1107:233-242, 2014

T. Saygılı, S. Akıncılar, B. Akgül, A. Nalbant, "Aggregatibacter actinomycetemcomitans GroEL Protein Promotes Conversion of Human CD4+T Cells into IFN-gamma IL10 Producing Tbet+ Th1 Cells", PLOS ONE, e49252 pp., 2012

 

2002-2010

B. Akgül, K.-W. Lin, H.M.-O. Yang, Y.-H. Chen, T.-H. Lu, C.-H. Chen, T. Kikuchi, Y.-S. Chen, C.-P.D Tu., "Garlic accelerates red blood cell turnover and splenic erythropoietic gene expression in mice: evidence for erythropoietin-independent erythropoiesis", PLOS ONE, e15358, 2010

B. Akgül, C.-P.D. Tu, "mRNA decay analysis in Drosophila melanogaster drug-induced changes in glutathione S-transferase D21 mRNA stability", Methods in Enzymology, 448:285-297, 2008

B. Akgül, B, C.-P. D. Tu, "Regulation of mRNA stability through a pentobarbital-responsive element", Archives of Biochemistry and Biophysics, 459:143-150, 2007

C.-P.D. Tu, B. Akgül, "Drosophila glutathione S-transferases", Methods in enzymology , 401:204-226, 2005

B. Akgül, C.-P.D. Tu, "Pentobarbital-mediated regulation of alternative polyadenylation in Drosophila glutathione S-transferase D21 mRNA", Journal of Biological Chemistry, 279:4027-4033, 2004

B. Akgül, C.-P. D. Tu, "Evidence for a stabilizer element in the untranslated regions of Drosophila glutathione S-transferase D1 mRNA", Journal of Biological Chemistry, 277:34700-34707, 2002